Turns an SCE into a nicely formatted counts matrix

This function takes an SCE and returns its counts matrix. It has additional features, such as adding the column/row names to the data, and subsetting the matrix automatically.

SCEtoMatrix(sce, rowList = NULL, colList = NULL, addRowData = TRUE,
  addColData = TRUE, transpose = FALSE)

Arguments

sce	the sce to format
rowList	numeric vector indicating which rows to subset the matrix to. Defaults to NULL
colList	numeric vector indicating which cols to subset the matrix to. Defaults to NULL
addRowData	logical. Should the function add the original rowdata from the matrix. Defaults to TRUE
addColData	logical. Should the function add the original coldata from the matrix. Defaults to TRUE
transpose	whether to tranpose the matrix before returning